Upload folder using huggingface_hub
Browse files- adaptation_plan.json +79 -0
- checkpoint_final.pth +3 -0
adaptation_plan.json
ADDED
|
@@ -0,0 +1,79 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"architecture_plans": {
|
| 3 |
+
"arch_class_name": "ResEncL",
|
| 4 |
+
"arch_kwargs": null,
|
| 5 |
+
"arch_kwargs_requiring_import": null
|
| 6 |
+
},
|
| 7 |
+
"pretrain_plan": {
|
| 8 |
+
"dataset_name": "Dataset745_OpenNeuro_v2",
|
| 9 |
+
"plans_name": "nnsslPlans",
|
| 10 |
+
"original_median_spacing_after_transp": [
|
| 11 |
+
1,
|
| 12 |
+
1,
|
| 13 |
+
1
|
| 14 |
+
],
|
| 15 |
+
"image_reader_writer": "SimpleITKIO",
|
| 16 |
+
"transpose_forward": [
|
| 17 |
+
0,
|
| 18 |
+
1,
|
| 19 |
+
2
|
| 20 |
+
],
|
| 21 |
+
"transpose_backward": [
|
| 22 |
+
0,
|
| 23 |
+
1,
|
| 24 |
+
2
|
| 25 |
+
],
|
| 26 |
+
"configurations": {
|
| 27 |
+
"onemmiso": {
|
| 28 |
+
"data_identifier": "nnsslPlans_3d_fullres",
|
| 29 |
+
"preprocessor_name": "DefaultPreprocessor",
|
| 30 |
+
"spacing_style": "onemmiso",
|
| 31 |
+
"normalization_schemes": [
|
| 32 |
+
"ZScoreNormalization"
|
| 33 |
+
],
|
| 34 |
+
"use_mask_for_norm": [
|
| 35 |
+
false
|
| 36 |
+
],
|
| 37 |
+
"resampling_fn_data": "resample_data_or_seg_to_shape",
|
| 38 |
+
"resampling_fn_data_kwargs": {
|
| 39 |
+
"is_seg": false,
|
| 40 |
+
"order": 3,
|
| 41 |
+
"order_z": 0,
|
| 42 |
+
"force_separate_z": null
|
| 43 |
+
},
|
| 44 |
+
"resampling_fn_mask": "resample_data_or_seg_to_shape",
|
| 45 |
+
"resampling_fn_mask_kwargs": {
|
| 46 |
+
"is_seg": true,
|
| 47 |
+
"order": 1,
|
| 48 |
+
"order_z": 0,
|
| 49 |
+
"force_separate_z": null
|
| 50 |
+
},
|
| 51 |
+
"spacing": [
|
| 52 |
+
1,
|
| 53 |
+
1,
|
| 54 |
+
1
|
| 55 |
+
],
|
| 56 |
+
"patch_size": [
|
| 57 |
+
160,
|
| 58 |
+
160,
|
| 59 |
+
160
|
| 60 |
+
]
|
| 61 |
+
}
|
| 62 |
+
},
|
| 63 |
+
"experiment_planner_used": "FixedResEncUNetPlanner"
|
| 64 |
+
},
|
| 65 |
+
"pretrain_num_input_channels": 1,
|
| 66 |
+
"recommended_downstream_patchsize": [
|
| 67 |
+
160,
|
| 68 |
+
160,
|
| 69 |
+
160
|
| 70 |
+
],
|
| 71 |
+
"key_to_encoder": "encoder.stages",
|
| 72 |
+
"key_to_stem": "encoder.stem",
|
| 73 |
+
"keys_to_in_proj": [
|
| 74 |
+
"encoder.stem.convs.0.conv",
|
| 75 |
+
"encoder.stem.convs.0.all_modules.0"
|
| 76 |
+
],
|
| 77 |
+
"key_to_lpe": null,
|
| 78 |
+
"trainer_name": "BaseMAETrainer_BS8"
|
| 79 |
+
}
|
checkpoint_final.pth
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:5bd48c0fad8d97a16c2695c4607f28cf16339d59d77f973120e33877a9237ab3
|
| 3 |
+
size 491196942
|