aryopg commited on
Commit
87abb6c
·
verified ·
1 Parent(s): 892cef6

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +7 -0
README.md CHANGED
@@ -272,6 +272,11 @@ BALM-Benchmark is a comprehensive benchmark suite that combines multiple seminal
272
  - **Y** (`float32`): binding affinity value in pKd.
273
  - **Drug** (`string`): Ligand sequence (i.e., SMILES string).
274
  - **Target** (`string`): Protein sequence (i.e., sequence of amino acids).
 
 
 
 
 
275
 
276
 
277
  ### Dataset Sources
@@ -284,6 +289,7 @@ BALM-Benchmark is a comprehensive benchmark suite that combines multiple seminal
284
  - **MCL1**:
285
  - **Mpro**:
286
  - **SYK**:
 
287
 
288
  ## Uses
289
 
@@ -307,6 +313,7 @@ As mentioned in the [Dataset Sources](#dataset-sources), the available datasets
307
  - `MCL1`
308
  - `Mpro`
309
  - `SYK`
 
310
 
311
  Notice that all datasets only have one split (`train`). This is intentional such that the users can define their own splits, and can experiment with more random seeds for robustness.
312
  We highly recommend checking out different strategies for splitting the data (e.g., BindingDB) in [our BALM code repository](https://github.com/meyresearch/BALM/blob/refactor/balm/datasets/bindingdb_filtered.py#L157-L169).
 
272
  - **Y** (`float32`): binding affinity value in pKd.
273
  - **Drug** (`string`): Ligand sequence (i.e., SMILES string).
274
  - **Target** (`string`): Protein sequence (i.e., sequence of amino acids).
275
+ - **USP7**:
276
+ - **Index** (`string`): Index of the ligand-target pair.
277
+ - **Y** (`float32`): binding affinity value in pKd.
278
+ - **Drug** (`string`): Ligand sequence (i.e., SMILES string).
279
+ - **Target** (`string`): Protein sequence (i.e., sequence of amino acids).
280
 
281
 
282
  ### Dataset Sources
 
289
  - **MCL1**:
290
  - **Mpro**:
291
  - **SYK**:
292
+ - **USP7**:
293
 
294
  ## Uses
295
 
 
313
  - `MCL1`
314
  - `Mpro`
315
  - `SYK`
316
+ - `USP7`
317
 
318
  Notice that all datasets only have one split (`train`). This is intentional such that the users can define their own splits, and can experiment with more random seeds for robustness.
319
  We highly recommend checking out different strategies for splitting the data (e.g., BindingDB) in [our BALM code repository](https://github.com/meyresearch/BALM/blob/refactor/balm/datasets/bindingdb_filtered.py#L157-L169).