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Browse files- README.md +49 -1
- data-00000-of-00001.arrow +3 -0
- dataset_info.json +32 -0
- state.json +13 -0
README.md
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---
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---
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language:
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- "en"
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pretty_name: "rare disease corpus"
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tags:
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- "rare disease corpus"
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- "rare-disease corpus"
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- "rare-disease database"
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license: "apache-2.0"
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---
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# Dataset Card for ReCOP
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## What's for?
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The data for ReCOP is sourced from the [National Organization for Rare Disorders (NORD) database](https://rarediseases.org/), which compiles reports on rare diseases.
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__NORD is committed to the identification, treatment, and cure of rare diseases through education, advocacy, research, and service programs.__
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The primary objective of developing ReCOP using the NORD database is to provide comprehensive expertise on rare diseases for LLMs.
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This expertise can be leveraged to enhance the diagnostic capabilities of LLMs through retrieval-augmented generation.
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## Corpus Overview
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ReCOP divides each rare disease report into chunks: __overview, symptoms, causes, effects, related disorders, diagnosis__, and __standard therapies__. Each property of the disease corresponds to a specific chunk in ReCOP.
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In this manner, ReCOP generates 9268 chunks based on the reports of 1324 rare diseases for the NORD database, with each report producing seven chunks corresponding to the properties of a rare disease.
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<img width="800" height="290" src="https://anonymous.4open.science/r/redis-bench-EBE2/figures/corpus.png">
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## Using ReCOP for Retrieval Augmentation Generations
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Simply follow our benchmark repository [**ReDis-QA-Bench**](https://github.com/guanchuwang/redis-bench) to run the retrieval augmentation generations on the [ReDis-QA](https://huggingface.co/datasets/guan-wang/ReDis-QA) dataset:
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```bash
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git clone https://github.com/guanchuwang/redis-bench.git
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cd redis-bench
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bash rag-bench/scripts/run_exp.sh
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```
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## Benchmark Results of Retrieval Augmentation Generations
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Benchmark results of retrieval augmentation generations based on ReCOP, where the LLMs take [Llama-2-7B-chat](https://huggingface.co/meta-llama/Llama-2-7b-chat), [Mistral-7B-instruct-v0.2](https://huggingface.co/mistralai/Mistral-7B-Instruct-v0.2https://huggingface.co/mistralai/Mistral-7B-Instruct-v0.2), [Phi-3-7B-instruct](https://huggingface.co/microsoft/Phi-3-small-8k-instruct), [Gemmma-1.1-7B-it](https://huggingface.co/google/gemma-1.1-7b-it), and [Qwen-2-7B-Instruct](https://huggingface.co/Qwen/Qwen2-7B-Instruct).
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<img width="200" height="200" src="https://anonymous.4open.science/r/redis-bench-EBE2/figures/radar_Mistral-7B-v0.2.png"> <img width="200" height="200" src="https://anonymous.4open.science/r/redis-bench-EBE2/figures/radar_Gemma-1.1-7B.png"> <img width="200" height="200" src="https://anonymous.4open.science/r/redis-bench-EBE2/figures/radar_Phi-3-7B.png"> <img width="200" height="200" src="https://anonymous.4open.science/r/redis-bench-EBE2/figures/radar_Qwen-2-7B.png">
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## Citation Information
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Coming soon
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data-00000-of-00001.arrow
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version https://git-lfs.github.com/spec/v1
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oid sha256:20a76ec275c4026e5b80d5cb37b7e83457c98d3b6730320dd31b2ce652a7dd61
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size 34816168
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dataset_info.json
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{
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"nordid": {
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"dtype": "int64",
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"_type": "Value"
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},
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"rare-disease": {
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"dtype": "string",
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"_type": "Value"
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}
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},
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"homepage": "",
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"license": ""
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}
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state.json
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{
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"_data_files": [
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{
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"filename": "data-00000-of-00001.arrow"
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],
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