Update Dockerfile

Dockerfile

@@ -1,43 +1,34 @@
-
-FROM rocker/tidyverse:latest
-
-WORKDIR /code
-
-RUN apt-get update && apt-get install -y --no-install-recommends \
-    pandoc \
-    pandoc-citeproc \
-    curl \
-    gdebi-core \
-    && rm -rf /var/lib/apt/lists/*
-
-# Install stable packages from CRAN
-RUN install2.r --error \
-    ggExtra \
-    shiny \
-    jsonlite \
-    ggplot2 \
-    htmltools \
-    remotes \
-    renv \
-    knitr \
-    rmarkdown \
-    quarto 
-    
-# Install development packages from GitHub
-RUN installGithub.r \
-    rstudio/bslib \
-    rstudio/httpuv
-
-RUN curl -LO https://quarto.org/download/latest/quarto-linux-amd64.deb
-RUN gdebi --non-interactive quarto-linux-amd64.deb
-
-RUN useradd -m -u 4352 user
-USER user
-ENV HOME=/home/user \
-    PATH=/home/user/.local/bin:$PATH
-WORKDIR $HOME/app
-
-
-COPY --chown=user . $HOME/app
-
-CMD ["quarto", "serve", "title.qmd", "--port", "7860", "--host", "0.0.0.0"]
+FROM rocker/rstudio:4.2.3
+
+LABEL source="https://github.com/davetang/learning_docker/blob/main/rstudio/Dockerfile"
+
+MAINTAINER Dave Tang <[email protected]>
+
+ARG bioc_ver=3.16
+
+RUN apt-get clean all && \
+    apt-get update && \
+    apt-get upgrade -y && \
+    apt-get install -y \
+        libhdf5-dev \
+        libcurl4-gnutls-dev \
+        libssl-dev \
+        libxml2-dev \
+        libpng-dev \
+        libxt-dev \
+        zlib1g-dev \
+        libbz2-dev \
+        liblzma-dev \
+        libglpk40 \
+        libgit2-dev \
+    && apt-get clean all && \
+    apt-get purge && \
+    rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
+
+RUN Rscript -e "install.packages(c('tidymodels', 'tidyverse', 'ggcorrplot', 'readxl', 'skimr'));"
+
+# the rstudio/ path is set for building with GitHub Actions
+# COPY --chown=rstudio:rstudio rstudio/rstudio-prefs.json /home/rstudio/.config/rstudio
+# COPY --chown=rstudio:rstudio rstudio/.Rprofile /home/rstudio/
+
+WORKDIR /home/rstudio