Spaces:
Running
Running
try a new Dockerfile
Browse files- .gitignore +1 -0
- Dockerfile +21 -10
- Makefile +8 -2
- README.md +6 -0
.gitignore
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@@ -1,2 +1,3 @@
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.Renviron
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*.sqlite
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.Renviron
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*.sqlite
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build.log
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Dockerfile
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ARG GITHUB_PAT
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FROM rocker/r2u:22.04
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WORKDIR /workspace
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-
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ENV RUSTUP_HOME=/usr/local/rustup \
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CARGO_HOME=/usr/local/cargo \
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PATH=/usr/local/cargo/bin:$PATH
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RUN set -eux; \
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apt-get update; \
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apt-get install -y --no-install-recommends \
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wget \
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; \
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rm -rf /var/lib/apt/lists/*;
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-
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RUN install2.r --error -s --deps TRUE \
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RUN Rscript -e "install.packages('b64', repos = c('https://extendr.r-universe.dev', getOption('repos')))"
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RUN Rscript -e "install.packages('uwu', repos = c('https://josiahparry.r-universe.dev', getOption('repos')))"
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RUN installGithub.r \
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-
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# RUN adduser newuser
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# COPY --chown=newuser . .
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-
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RUN
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EXPOSE 7860
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CMD R -e "print(nchar(Sys.getenv('GITHUB_PAT'))); source('app.R'); "
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ARG GITHUB_PAT
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FROM rocker/r2u:22.04
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ENV RUSTUP_HOME=/usr/local/rustup \
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CARGO_HOME=/usr/local/cargo \
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PATH=/usr/local/cargo/bin:$PATH
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# Install system packages
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RUN set -eux; \
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apt-get update; \
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apt-get install -y --no-install-recommends \
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wget \
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; \
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rm -rf /var/lib/apt/lists/*;
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# Install R packages
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RUN install2.r --error -s --deps TRUE \
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htmltools tidyverse zeallot rlang glue this.path DBI pool RSQLite remotes promises assertthat log
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RUN Rscript -e "install.packages('b64', repos = c('https://extendr.r-universe.dev', getOption('repos')))"
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RUN Rscript -e "install.packages('uwu', repos = c('https://josiahparry.r-universe.dev', getOption('repos')))"
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RUN installGithub.r \
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devOpifex/ambiorix devOpifex/scilis devOpifex/signaculum jrosell/ambhtmx
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# Prepare a user
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RUN useradd --create-home --shell /bin/bash user
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USER user
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ENV HOME=/home/user \
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PATH=/home/user/.local/bin:$PATH
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WORKDIR $HOME/app
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COPY --chown=user . $HOME/app
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# Entry
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EXPOSE 7860
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CMD R -e "print(nchar(Sys.getenv('GITHUB_PAT'))); source('app.R'); "
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Makefile
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&& docker run --env-file=.Renviron -p 7860:7860 --name ambhtmx-container --rm ambhtmx-image \
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&& echo "Done"
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-
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(docker container rm -f ambhtmx-container || true)\
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&& (docker rmi $(docker images --format '{{.Repository}}:{{.ID}}'| egrep 'ambhtmx-image' | cut -d':' -f2 | uniq) --force || true) \
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&& echo "Done"
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&& docker run --env-file=.Renviron -p 7860:7860 --name ambhtmx-container --rm ambhtmx-image \
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&& echo "Done"
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clean:
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(docker container rm -f ambhtmx-container || true)\
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&& (docker rmi $(docker images --format '{{.Repository}}:{{.ID}}'| egrep 'ambhtmx-image' | cut -d':' -f2 | uniq) --force || true) \
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&& echo "Done"
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build:
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docker build -f Dockerfile --no-cache --progress=plain -t ambhtmx-image . 2>&1 | tee build.log
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run:
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docker run --env-file=.Renviron -p 7860:7860 --name ambhtmx-container --rm ambhtmx-image
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README.md
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## Troubleshooting
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Check the [known issues](https://github.com/jrosell/ambhtmx/issues), and if you have another issue? Please, [let me know](https://github.com/jrosell/ambhtmx/issues).
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## Troubleshooting
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If you want to see the logs:
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```
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docker build -f Dockerfile --no-cache --progress=plain -t ambhtmx-image . 2>&1 | tee build.log
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```
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Check the [known issues](https://github.com/jrosell/ambhtmx/issues), and if you have another issue? Please, [let me know](https://github.com/jrosell/ambhtmx/issues).
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