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"Objective : The acceptance of fibromyalgia as a disease entity and its definitive diagnosis have been hampered by a dearth of knowledge concerning the underlying pathophysiology of this disease and the lack of specific biochemical markers applicable to its diagnosis . To determine whether abnormal collagen metabolism is a characteristic of fibromyalgia , we have analyzed collagen metabolites in the urine and serum of patients with fibromyalgia . Methods : The diagnosis of fibromyalgia was made according to the American College of Rheumatology criteria . Urine and serum were collected under standardized conditions from 39 patients and 55 age- and sex-matched controls . Pyridinoline ( Pyd ) and deoxypyridinoline ( Dpyd ) , which represent products of lysyl oxidase-mediated cross-linking in collagen and are indicators of connective tissue and bone degradation , respectively , were analyzed by ion-paired and gradient HPLC method with fluorescence detection ( HPLC ) . Levels of hydroxypyroline ( Hyp ) , a collagen turnover marker , were also measured . The findings were related to creatinine levels and the Pyd/Dpyd ratio determined . Results . The Pyd/Dpyd ratios in the urine and serum and the Hyp in the urine were significantly lower in patients with fibromyalgia than in healthy controls . Conclusion : Decreased levels of collagen cross-linking may contribute to remodeling of the extracellular matrix and collagen deposition around the nerve fibers in fibromyalgia and contribute to the lower pain threshold at the tender points . Analysis of altered collagen metabolism either by histologic examination on biopsy or , preferably , by HPLC analysis of collagen metabolites in urine or serum may aid to understand more about the pathogenesis of fibromyalgia ."
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ZfuerRheumatologie.8057s061.eng.abstr | ZfuerRheumatologie.8057s061.eng.abstr | [
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"To study the hormonal perturbations in FMS patients we injected sixteen FMS patients and seventeen controls a cocktail of the hypothalamic releasing hormones : Corticotropin-releasing hormone ( CRH ) , Thyrotropin-releasing hormone ( TRH ) , Growth hormone-releasing hormone ( GHRH ) , and Luteinizing hormone-releasing hormone ( LHRH ) and observed the hormonal secretion pattern of the pituitary together with the hormones of the peripheral endocrine glands . We found in FMS patients elevated basal values of ACTH and cortisol , lowered basal values of insulin-like growth factor I ( IGF-I ) and of triiodothyronine ( T3), elevated basal values of follicle-stimulating hormone ( FSH ) and lowered basal values of estrogen . Following injection of the four releasing-hormones , we found in FMS patients an augmented response of ACTH , a blunted response of TSH , while the prolactin response was exaggerated . The effects of LHRH stimulation were investigated in six FMS patients and six controls and disclosed a significantly blunted response of LH in FMS . We explain the deviations of hormonal secretion in FMS patients as being caused by chronic stress , which , after being perceived and processed by the central nervous system ( CNS ) , activates hypothalamic CRH neurons . CRH , on the one hand , activates the pituitary-adrenal axis , but also stimulates at the hypothalamic level somatostatin secretion which , in turn , causes inhibition of GH and TSH at the pituitary level . The suppression of gonadal function may also be attributed to elevated CRH by its ability to inhibit hypothalamic LHRH release , although it could act also directly on the ovary by inhibiting FSH-stimulated estrogen production . We conclude that the observed pattern of hormonal deviations in FMS patients is a CNS adjustment to chronic pain and stress , constitutes a specific entity of FMS , and is primarily evoked by activated CRH neurons ."
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"Objective : Comparison of low back pain ( LBP ) patients with and without fibromyalgia syndrome ( FMS ) with regard to affective distress . Methods : Patients with LBP who had been admitted to various clinics in Germany were examined upon admission . Comparisons were done by dividing the patients into groups with and without signs of FMS . Additionally , both groups were compared after being matched according to sex , age , and pain severity . Results : 15 out of 135 LBP patients met the American College of Rheumatology criteria for fibromyalgia . Patients with FMS showed remarkably higher levels of pain severity and affective distress . After controlling for different levels of pain severity , these pronounced differences disappeared . Conclusion : Affective distress is not a unique feature of FMS , but seem to be caused entirely by higher levels of pain severity ."
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ZfuerRheumatologie.90580013.eng.abstr | ZfuerRheumatologie.90580013.eng.abstr | [
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"Introduction : Results of animal experiments have demonstrated that the osseous integration of non-cemented prostheses can , at the very least temporarily , be impaired by the application of non-steroidal antiphlogistic agents ( such as diclofenac ) . It is the objective of this study to examine whether there is a direct influence of diclofenac used in usual clinical dosages ( 3 times 50 mg daily ) on bone cells and their progenitor cells which would explain the observed slow integration of the prostheses . Methods : To investigate this , cultivated human in vitro osteoblasts and stromal bone marrow cells were incubated with increasing doses of the medications . Our study focused on the effect of diclofenac application on proliferation and functional metabolism in both cell lines . The measurable maximal plasma concentration 2h after the application of one tablet Voltaren 50 reached 1.6µg/ml. This correlated with diclofenac concentrations between 1 and 10 ml found in our experiments . The detected values were correlated to the control group ( 0 µg/ml diclofenac ) . Results : The drug effect upon osteoblasts was higher than on progenitor cells . The proliferation of in vitro stromal bone marrow cells , compared to untreated cells , was found to be decreased . We observed a decrease to 82% at a diclofenac concentration of 1 µg/ml, Osteoblasts exhibited a decrease to 97,5% at the same concentration . The DNA synthesis increased to 118% in stromal bone marrow cells , in osteoblasts to 144% . In contrast , we detected a neglectible decrease to 92% in the collagen synthesis of osteoblasts compared to untreated cells . The synthesis of osteocalcin by osteoblasts increased to 119% . The alkaline phosphatase activity was found to be decreased to 88% in stromal bone marrow cells and increased in osteoblasts to 111% . Conclusion : Temporary inhibiting effects on osseous integration in non-cemented prosthesis by diclofenac could be caused by a disturbance in the anabolic bone metabolism , exhibited by an increase of osteoblastic osteocalcin expression . Osteocalcin as a known negative regulator of the osteoneogenesis is most likely inhibiting the collagen matrix deposition ."
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"The RS3PE syndrome ( Remitting Seronegative Symmetrical Synovitis with Pitting Edema ) is a manifestation of rheumatoid arthritis in the elderly with a good prognosis . It usually presents as an acute , symmetric polysynovitis with edema of the dorsum of the hands and feet . Anti-inflammatory treatment with corticosteroids leads to prompt improvement . We describe the case of an 81 year old man with a primarily unilateral manifestation involving the right hand . A thrombosis of the axillary vein was suspected . Within a few days he developed a pitting edema of the dorsum of the other hand . Movement of both shoulders and wrists was painful . Low-dose corticosteroid therapy resulted in a rapid improvement of the edema and the inflammatory symptoms ."
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ZfuerRheumatologie.90580088.eng.abstr | ZfuerRheumatologie.90580088.eng.abstr | [
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ZfuerRheumatologie.90580185.eng.abstr | ZfuerRheumatologie.90580185.eng.abstr | [
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"In rheumatic diseases , radiation synovectomy is a reliable method . Meanwhile , radiation synovectomy is an outpatient therapy . In addition , combination with arthroscopic synovectomy is an increasing therapeutic modality . In comparison to the hitherto inpatient modality , a greater lymphatic emigration of the radionuclide and , therefore , a higher radiation exposure is possible . In 35 patients we found radionuclide emigration in 17 cases by whole body scintigraphy , resulting in a 50%-percentile with 68.27%-confidence interval of 1.8 ( 0.45-4.78)% of the injected yttrium-90-activity. Comparison of 3 groups with the above mentioned therapy modalitites resulted in no statistical difference ( p > 0.05 ) . Because of the found radionuclide emigration , a radiation dose of 0.1 ( 0.05-0,18) mSv in women and 0.2 ( 0.1-0.38) mSv in men was calculated . For lymph nodes , liver , spleen and whole body radiation doses of 619 ( 154-1644 ) mSv , 62 ( 15-165 ) mSv , 62 ( 15-165 ) mSv and 37 ( 9-99 ) mSv were calculated . Gonadal radiation dose can be neglected and the morbidity rate for tumors bacause of the whole body radiation dose is low with a value of 0.4 per thousand . Therefore , radiation synovectomy can be used unlimited by patients age and independent of the therapeutic modality ."
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"Heavy physical work load is a known determinant of osteoarthritis of the hip , which may account for the high risk observed among farmers . On the other hand , the data on influence of heavy manual work in the pathogenesis of hand osteoarthritis are still controversial . We examined 25 retired farm laborers who strenously worked for more than 50 years . The investigation included a history of professional activity , clinical and radiological examination of the hands , hips and knees , MRI of hand and laboratory evaluation of 4 participants . Interestingly , the farm laborers with osteoarthritis of the hands , hardly complained . In many of the proximal interphalangeal joints , a discrepancy was observed between the clinical hypertrophic changes and the radiological osteoarthritis which was weak or absent . This difference was less pronounced in the distal interphalangeal joints . Furthermore the distribution pattern of the osteoarthritis of the hand was striking with an overproportional involvement of the metacarpophalangeal joints and less pronounced of the intercarpal joints . Most often both hands have been affected and the typical localization of the metacarphophalangeal joint osteoarthritis was the first , second and third finger . In all but one participant we found at least unilateral osteoarthritis of the hip and compared to the hands , complaints were more severe . Our findings support the hypothesis that the distribution of osteoarthritis in the hand is affected by lifelong farming . As shown by the data on proximal interphalangeal joints , the periarticular tissue can adapt to the mechanical load in the strength grip ."
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4 | 11064201-3 | [
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8 | 11011148-3 | [
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11 | 11011148-4 | [
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14 | 11011148-5 | [
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18 | 10767540-2 | [
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22 | 10747015-3 | [
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25 | 10648512-3 | [
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29 | 10629188-5 | [
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33 | 10515909-4 | [
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37 | 10503549-5 | [
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] | [] | [] | [
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}
] |
50 | 10464187-11 | [
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145
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}
] |
53 | 10463184-4 | [
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"text": [
"Northern blot and primer extension analyses indicated that yfhS is transcribed by E sigma E during sporulation."
],
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0,
111
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]
}
] | [
{
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] | [] | [] | [
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}
] |
56 | 10463184-8 | [
{
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"type": "<BB_NULL_STR>",
"text": [
"These results suggest that YfhP may act as a negative regulator for the transcription of yfhQ, yfhR, sspE and yfhP."
],
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0,
115
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]
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110,
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] | [] | [] | [
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"type": "genic_interaction",
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}
] |
62 | 10383978-4 | [
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0,
134
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]
}
] | [
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14,
20
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{
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115,
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}
] | [] | [] | [
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{
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"type": "genic_interaction",
"arg1_id": "62-agent-11",
"arg2_id": "62-target-19",
"normalized": []
}
] |
66 | 10323866-7 | [
{
"id": "67",
"type": "<BB_NULL_STR>",
"text": [
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],
"offsets": [
[
0,
185
]
]
}
] | [
{
"id": "66-agent-16",
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105,
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60,
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},
{
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],
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165,
171
]
],
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}
] | [] | [] | [
{
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},
{
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"type": "genic_interaction",
"arg1_id": "66-agent-22",
"arg2_id": "66-target-26",
"normalized": []
}
] |
70 | 10323866-9 | [
{
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"type": "<BB_NULL_STR>",
"text": [
"Evidence based on the use of modified and mutant forms of the phosphatase protein indicates that SpoIIE blocks the capacity of unphosphorylated SpoIIAA to activate sigmaF until formation of the polar septum is completed."
],
"offsets": [
[
0,
220
]
]
}
] | [
{
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97,
103
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],
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},
{
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144,
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{
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144,
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},
{
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"sigmaF"
],
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164,
170
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],
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}
] | [] | [] | [
{
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{
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"type": "genic_interaction",
"arg1_id": "70-agent-22",
"arg2_id": "70-target-25",
"normalized": []
}
] |
74 | 10234829-1 | [
{
"id": "75",
"type": "<BB_NULL_STR>",
"text": [
"Dephosphorylation of SpoIIAA-P by SpoIIE is strictly dependent on the presence of the bivalent metal ions Mn2+ or Mg2+."
],
"offsets": [
[
0,
119
]
]
}
] | [
{
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34,
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],
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21,
30
]
],
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}
] | [] | [] | [
{
"id": "76",
"type": "genic_interaction",
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"arg2_id": "74-target-2",
"normalized": []
}
] |
77 | 10220166-7 | [
{
"id": "78",
"type": "<BB_NULL_STR>",
"text": [
"(i) The finding that the bmrUR operon is under sigmaB control indicates that the elimination of multidrug compounds might be a new function in multiple stress resistance."
],
"offsets": [
[
0,
170
]
]
}
] | [
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25,
30
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],
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}
] | [] | [] | [
{
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}
] |
80 | 10200961-2 | [
{
"id": "81",
"type": "<BB_NULL_STR>",
"text": [
"Cell specificity is first established in the forespore under the control of the sigma F factor, which is itself activated through the action of the SpoIIE serine phosphatase, an enzyme targeted to the septum between the two cells."
],
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[
0,
230
]
]
}
] | [
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148,
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80,
87
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],
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}
] | [] | [] | [
{
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}
] |
83 | 10075739-3 | [
{
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"type": "<BB_NULL_STR>",
"text": [
"Most cot genes, and the gerE gene, are transcribed by sigmaK RNA polymerase."
],
"offsets": [
[
0,
76
]
]
}
] | [
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54,
60
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},
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24,
28
]
],
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}
] | [] | [] | [
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{
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"type": "genic_interaction",
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"arg2_id": "83-target-5",
"normalized": []
}
] |
87 | 10075739-4 | [
{
"id": "88",
"type": "<BB_NULL_STR>",
"text": [
"Previously, it was shown that the GerE protein inhibits transcription in vitro of the sigK gene encoding sigmaK."
],
"offsets": [
[
0,
112
]
]
}
] | [
{
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34,
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86,
90
]
],
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}
] | [] | [] | [
{
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"type": "genic_interaction",
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"normalized": []
}
] |
90 | 10075739-8 | [
{
"id": "91",
"type": "<BB_NULL_STR>",
"text": [
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],
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[
0,
169
]
]
}
] | [
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31,
37
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114,
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162,
168
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],
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}
] | [] | [] | [
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"type": "genic_interaction",
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"normalized": []
}
] |
94 | 10075739-11 | [
{
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"type": "<BB_NULL_STR>",
"text": [
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],
"offsets": [
[
0,
143
]
]
}
] | [
{
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47,
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},
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55,
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124,
128
]
],
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}
] | [] | [] | [
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{
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{
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"type": "genic_interaction",
"arg1_id": "94-agent-20",
"arg2_id": "94-target-22",
"normalized": []
}
] |
100 | 9852018-5 | [
{
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"type": "<BB_NULL_STR>",
"text": [
"sspG transcription also requires the DNA binding protein GerE."
],
"offsets": [
[
0,
62
]
]
}
] | [
{
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{
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],
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0,
4
]
],
"normalized": []
}
] | [] | [] | [
{
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"type": "genic_interaction",
"arg1_id": "100-agent-8",
"arg2_id": "100-target-0",
"normalized": []
}
] |
103 | 9852018-6 | [
{
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"type": "<BB_NULL_STR>",
"text": [
"In contrast, sspJ is transcribed in the forespore compartment by RNA polymerase with the forespore-specific sigmaG and appears to give a monocistronic transcript."
],
"offsets": [
[
0,
162
]
]
}
] | [
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108,
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},
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],
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13,
17
]
],
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}
] | [] | [] | [
{
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"type": "genic_interaction",
"arg1_id": "103-agent-15",
"arg2_id": "103-target-2",
"normalized": []
}
] |
106 | 9696775-12 | [
{
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"type": "<BB_NULL_STR>",
"text": [
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],
"offsets": [
[
0,
190
]
]
}
] | [
{
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},
{
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{
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},
{
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},
{
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},
{
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},
{
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"text": [
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],
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[
174,
180
]
],
"normalized": []
}
] | [] | [] | [
{
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},
{
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{
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{
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{
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"type": "genic_interaction",
"arg1_id": "106-agent-20",
"arg2_id": "106-target-25",
"normalized": []
}
] |
113 | 9696771-4 | [
{
"id": "114",
"type": "<BB_NULL_STR>",
"text": [
"This stress-induced increase in ykzA expression is absolutely dependent on the alternative sigma factor sigmaB, which controls a large stationary-phase and stress regulon."
],
"offsets": [
[
0,
171
]
]
}
] | [
{
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},
{
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],
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32,
36
]
],
"normalized": []
}
] | [] | [] | [
{
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"type": "genic_interaction",
"arg1_id": "113-agent-14",
"arg2_id": "113-target-4",
"normalized": []
}
] |
116 | 9636707-8 | [
{
"id": "117",
"type": "<BB_NULL_STR>",
"text": [
"sigma X also contributes to the expression of CsbB, a putative membrane-bound glucosyl transferase that is partially controlled by the sigma B stress response sigma factor."
],
"offsets": [
[
0,
172
]
]
}
] | [
{
"id": "116-agent-0",
"type": "agent",
"text": [
"sigma X"
],
"offsets": [
[
0,
7
]
],
"normalized": []
},
{
"id": "116-agent-19",
"type": "agent",
"text": [
"sigma B"
],
"offsets": [
[
135,
142
]
],
"normalized": []
},
{
"id": "116-target-7",
"type": "target",
"text": [
"CsbB"
],
"offsets": [
[
46,
50
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "118",
"type": "genic_interaction",
"arg1_id": "116-agent-0",
"arg2_id": "116-target-7",
"normalized": []
},
{
"id": "119",
"type": "genic_interaction",
"arg1_id": "116-agent-19",
"arg2_id": "116-target-7",
"normalized": []
}
] |
120 | 9271869-4 | [
{
"id": "121",
"type": "<BB_NULL_STR>",
"text": [
"Transcriptional studies showed that nadE is strongly induced in response to heat, ethanol and salt stress or after starvation for glucose in a sigma B-dependent manner."
],
"offsets": [
[
0,
168
]
]
}
] | [
{
"id": "120-agent-23",
"type": "agent",
"text": [
"sigma B"
],
"offsets": [
[
143,
150
]
],
"normalized": []
},
{
"id": "120-target-4",
"type": "target",
"text": [
"nadE"
],
"offsets": [
[
36,
40
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "122",
"type": "genic_interaction",
"arg1_id": "120-agent-23",
"arg2_id": "120-target-4",
"normalized": []
}
] |
123 | 10913081-11 | [
{
"id": "124",
"type": "<BB_NULL_STR>",
"text": [
"Furthermore, YtxH and YvyD seemed to be induced after phosphate starvation in the wild type in a sigma(B)-dependent manner and in the sigB mutant probably via sigma(H)."
],
"offsets": [
[
0,
168
]
]
}
] | [
{
"id": "123-agent-17",
"type": "agent",
"text": [
"sigma(B)"
],
"offsets": [
[
97,
105
]
],
"normalized": []
},
{
"id": "123-agent-27",
"type": "agent",
"text": [
"sigma(H)"
],
"offsets": [
[
159,
167
]
],
"normalized": []
},
{
"id": "123-target-1",
"type": "target",
"text": [
"YtxH"
],
"offsets": [
[
13,
17
]
],
"normalized": []
},
{
"id": "123-target-3",
"type": "target",
"text": [
"YvyD"
],
"offsets": [
[
22,
26
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "125",
"type": "genic_interaction",
"arg1_id": "123-agent-17",
"arg2_id": "123-target-1",
"normalized": []
},
{
"id": "126",
"type": "genic_interaction",
"arg1_id": "123-agent-17",
"arg2_id": "123-target-3",
"normalized": []
},
{
"id": "127",
"type": "genic_interaction",
"arg1_id": "123-agent-27",
"arg2_id": "123-target-1",
"normalized": []
},
{
"id": "128",
"type": "genic_interaction",
"arg1_id": "123-agent-27",
"arg2_id": "123-target-3",
"normalized": []
}
] |
129 | 10747015-5 | [
{
"id": "130",
"type": "<BB_NULL_STR>",
"text": [
"Localization of SpoIIE was shown to be dependent on the essential cell division protein FtsZ."
],
"offsets": [
[
0,
93
]
]
}
] | [
{
"id": "129-agent-14",
"type": "agent",
"text": [
"FtsZ"
],
"offsets": [
[
88,
92
]
],
"normalized": []
},
{
"id": "129-target-2",
"type": "target",
"text": [
"SpoIIE"
],
"offsets": [
[
16,
22
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "131",
"type": "genic_interaction",
"arg1_id": "129-agent-14",
"arg2_id": "129-target-2",
"normalized": []
}
] |
132 | 10094682-7 | [
{
"id": "133",
"type": "<BB_NULL_STR>",
"text": [
"The expression of the bkd operon was induced by the presence of isoleucine or valine in the growth medium and depended upon the presence of the sigma factor SigL, a member of the sigma 54 family."
],
"offsets": [
[
0,
195
]
]
}
] | [
{
"id": "132-agent-28",
"type": "agent",
"text": [
"SigL"
],
"offsets": [
[
157,
161
]
],
"normalized": []
},
{
"id": "132-target-4",
"type": "target",
"text": [
"bkd"
],
"offsets": [
[
22,
25
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "134",
"type": "genic_interaction",
"arg1_id": "132-agent-28",
"arg2_id": "132-target-4",
"normalized": []
}
] |
135 | 9108277-9 | [
{
"id": "136",
"type": "<BB_NULL_STR>",
"text": [
"From these results we conclude that ComK negatively regulates degR expression by preventing sigmaD-driven transcription of degR, possibly through interaction with the control region."
],
"offsets": [
[
0,
182
]
]
}
] | [
{
"id": "135-agent-6",
"type": "agent",
"text": [
"ComK"
],
"offsets": [
[
36,
40
]
],
"normalized": []
},
{
"id": "135-agent-13",
"type": "agent",
"text": [
"sigmaD"
],
"offsets": [
[
92,
98
]
],
"normalized": []
},
{
"id": "135-target-9",
"type": "target",
"text": [
"degR"
],
"offsets": [
[
62,
66
]
],
"normalized": []
},
{
"id": "135-target-13",
"type": "target",
"text": [
"sigmaD"
],
"offsets": [
[
92,
98
]
],
"normalized": []
},
{
"id": "135-target-17",
"type": "target",
"text": [
"degR"
],
"offsets": [
[
123,
127
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "137",
"type": "genic_interaction",
"arg1_id": "135-agent-6",
"arg2_id": "135-target-9",
"normalized": []
},
{
"id": "138",
"type": "genic_interaction",
"arg1_id": "135-agent-6",
"arg2_id": "135-target-13",
"normalized": []
},
{
"id": "139",
"type": "genic_interaction",
"arg1_id": "135-agent-13",
"arg2_id": "135-target-17",
"normalized": []
},
{
"id": "140",
"type": "genic_interaction",
"arg1_id": "135-agent-6",
"arg2_id": "135-target-17",
"normalized": []
}
] |
141 | 9139908-4 | [
{
"id": "142",
"type": "<BB_NULL_STR>",
"text": [
"We overproduced and purified sigma(X) from Escherichia coli and demonstrate that in vitro, both sigma(A) and sigma(X) holoenzymes recognize promoter elements within the sigX-ypuN control region."
],
"offsets": [
[
0,
194
]
]
}
] | [
{
"id": "141-agent-13",
"type": "agent",
"text": [
"sigma(A)"
],
"offsets": [
[
96,
104
]
],
"normalized": []
},
{
"id": "141-agent-15",
"type": "agent",
"text": [
"sigma(X)"
],
"offsets": [
[
109,
117
]
],
"normalized": []
},
{
"id": "141-target-22",
"type": "target",
"text": [
"sigX"
],
"offsets": [
[
169,
173
]
],
"normalized": []
},
{
"id": "141-target-23",
"type": "target",
"text": [
"ypuN"
],
"offsets": [
[
174,
178
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "143",
"type": "genic_interaction",
"arg1_id": "141-agent-13",
"arg2_id": "141-target-22",
"normalized": []
},
{
"id": "144",
"type": "genic_interaction",
"arg1_id": "141-agent-15",
"arg2_id": "141-target-22",
"normalized": []
},
{
"id": "145",
"type": "genic_interaction",
"arg1_id": "141-agent-13",
"arg2_id": "141-target-23",
"normalized": []
},
{
"id": "146",
"type": "genic_interaction",
"arg1_id": "141-agent-15",
"arg2_id": "141-target-23",
"normalized": []
}
] |
147 | 9401028-7 | [
{
"id": "148",
"type": "<BB_NULL_STR>",
"text": [
"Transcriptional studies demonstrated that the expression from the araE promoter is induced by L-arabinose, repressed by glucose, and negatively regulated by AraR."
],
"offsets": [
[
0,
162
]
]
}
] | [
{
"id": "147-agent-21",
"type": "agent",
"text": [
"AraR"
],
"offsets": [
[
157,
161
]
],
"normalized": []
},
{
"id": "147-target-8",
"type": "target",
"text": [
"araE"
],
"offsets": [
[
66,
70
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "149",
"type": "genic_interaction",
"arg1_id": "147-agent-21",
"arg2_id": "147-target-8",
"normalized": []
}
] |
150 | 9683469-3 | [
{
"id": "151",
"type": "<BB_NULL_STR>",
"text": [
"A sigmaW-dependent promoter (PW) precedes sigW, demonstrating that this transcription factor is positively autoregulated."
],
"offsets": [
[
0,
121
]
]
}
] | [
{
"id": "150-agent-1",
"type": "agent",
"text": [
"sigmaW"
],
"offsets": [
[
2,
8
]
],
"normalized": []
},
{
"id": "150-target-6",
"type": "target",
"text": [
"sigW"
],
"offsets": [
[
42,
46
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "152",
"type": "genic_interaction",
"arg1_id": "150-agent-1",
"arg2_id": "150-target-6",
"normalized": []
}
] |
153 | 9683503-1 | [
{
"id": "154",
"type": "<BB_NULL_STR>",
"text": [
"The results indicate that PhoP~P is sufficient to repress the transcription of the tagA and tagD promoters and also to activate the transcription of the tuaA promoter."
],
"offsets": [
[
0,
167
]
]
}
] | [
{
"id": "153-agent-4",
"type": "agent",
"text": [
"PhoP~P"
],
"offsets": [
[
26,
32
]
],
"normalized": []
},
{
"id": "153-target-13",
"type": "target",
"text": [
"tagA"
],
"offsets": [
[
83,
87
]
],
"normalized": []
},
{
"id": "153-target-15",
"type": "target",
"text": [
"tagD"
],
"offsets": [
[
92,
96
]
],
"normalized": []
},
{
"id": "153-target-25",
"type": "target",
"text": [
"tuaA"
],
"offsets": [
[
153,
157
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "155",
"type": "genic_interaction",
"arg1_id": "153-agent-4",
"arg2_id": "153-target-13",
"normalized": []
},
{
"id": "156",
"type": "genic_interaction",
"arg1_id": "153-agent-4",
"arg2_id": "153-target-15",
"normalized": []
},
{
"id": "157",
"type": "genic_interaction",
"arg1_id": "153-agent-4",
"arg2_id": "153-target-25",
"normalized": []
}
] |
158 | 9846747-4 | [
{
"id": "159",
"type": "<BB_NULL_STR>",
"text": [
"Primer extension experiments and Northern blot analysis show that an active sigmaA-dependent promoter precedes kdgR and transcription is terminated at the putative p-independent terminator downstream of kdgT."
],
"offsets": [
[
0,
208
]
]
}
] | [
{
"id": "158-agent-11",
"type": "agent",
"text": [
"sigmaA"
],
"offsets": [
[
76,
82
]
],
"normalized": []
},
{
"id": "158-target-15",
"type": "target",
"text": [
"kdgR"
],
"offsets": [
[
111,
115
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "160",
"type": "genic_interaction",
"arg1_id": "158-agent-11",
"arg2_id": "158-target-15",
"normalized": []
}
] |
161 | 9852014-4 | [
{
"id": "162",
"type": "<BB_NULL_STR>",
"text": [
"The sigmaB-dependent promoter drives expression of yvyD under stress conditions and after glucose starvation, whereas a sigmaH-dependent promoter is responsible for yvyD transcription following amino acid limitation."
],
"offsets": [
[
0,
216
]
]
}
] | [
{
"id": "161-agent-1",
"type": "agent",
"text": [
"sigmaB"
],
"offsets": [
[
4,
10
]
],
"normalized": []
},
{
"id": "161-agent-17",
"type": "agent",
"text": [
"sigmaH"
],
"offsets": [
[
120,
126
]
],
"normalized": []
},
{
"id": "161-target-7",
"type": "target",
"text": [
"yvyD"
],
"offsets": [
[
51,
55
]
],
"normalized": []
},
{
"id": "161-target-23",
"type": "target",
"text": [
"yvyD"
],
"offsets": [
[
165,
169
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "163",
"type": "genic_interaction",
"arg1_id": "161-agent-1",
"arg2_id": "161-target-7",
"normalized": []
},
{
"id": "164",
"type": "genic_interaction",
"arg1_id": "161-agent-17",
"arg2_id": "161-target-23",
"normalized": []
}
] |
165 | 9852015-1 | [
{
"id": "166",
"type": "<BB_NULL_STR>",
"text": [
"The Bacillus subtilis clpC operon is regulated by two stress induction pathways relying on either sigmaB or a class III stress induction mechanism acting at a sigmaA-like promoter."
],
"offsets": [
[
0,
180
]
]
}
] | [
{
"id": "165-agent-14",
"type": "agent",
"text": [
"sigmaB"
],
"offsets": [
[
98,
104
]
],
"normalized": []
},
{
"id": "165-agent-25",
"type": "agent",
"text": [
"sigmaA"
],
"offsets": [
[
159,
165
]
],
"normalized": []
},
{
"id": "165-target-2",
"type": "target",
"text": [
"clpC"
],
"offsets": [
[
22,
26
]
],
"normalized": []
}
] | [] | [] | [
{
"id": "167",
"type": "genic_interaction",
"arg1_id": "165-agent-14",
"arg2_id": "165-target-2",
"normalized": []
},
{
"id": "168",
"type": "genic_interaction",
"arg1_id": "165-agent-25",
"arg2_id": "165-target-2",
"normalized": []
}
] |
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